From the X-Men side of things:
X-Factor by Peter David (2005-2013)
Wolverine and the X-Men (2011-Present)
Messiah CompleX
Cable and Deadpool
Uncanny X-Force by Rick Remender (2010-2012)
Avengers side:
Captain America Volume 5 (Ed Brubaker's run)
Daredevil vol.2 (1998-2011) (Kevin Smith, David Mack, Brian Michael Bendis, Ed Brubaker)
Daredevil Vol. 3 (2011-present) (Mark Waid)
Hawkeye (2012-present)
Immortal Iron Fist
Uncanny Avengers (2012-Present)
Cosmic:
Everything from Annihilation through The Thanos Imperative